biology/racon - The NetBSD Packages Collection

Genomic consensus builder

Racon is intended as a standalone consensus module to correct raw
contigs generated by rapid assembly methods which do not include a
consensus step. The goal of Racon is to generate genomic consensus
which is of similar or better quality compared to the output generated
by assembly methods which employ both error correction and consensus
steps, while providing a speedup of several times compared to those
methods. It supports data produced by both Pacific Biosciences and
Oxford Nanopore Technologies.

Racon can be used as a polishing tool after the assembly with either
Illumina data or data produced by third generation of sequencing. The
type of data inputed is automatically detected.

Build dependencies

devel/cmake devel/pkgconf pkgtools/cwrappers

Runtime dependencies

(none)

Binary packages

OSArchitectureVersion
NetBSD 9.0i386racon-1.4.3.tgz
NetBSD 9.0i386racon-1.4.3.tgz
NetBSD 9.0i386racon-1.4.3.tgz
NetBSD 9.0x86_64racon-1.4.3.tgz
NetBSD 9.0x86_64racon-1.4.3.tgz
NetBSD 9.0x86_64racon-1.4.3.tgz
NetBSD 9.0x86_64racon-1.4.3.tgz
NetBSD 9.0x86_64racon-1.4.3.tgz
NetBSD 9.0x86_64racon-1.4.3.tgz
NetBSD 9.0x86_64racon-1.4.3.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.


Problem reports, updates or suggestions for this package should be reported with send-pr.