biology/ad2vcf - The NetBSD Packages Collection

Add allelic depth info from a SAM stream to a VCF file

ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.

Build dependencies


Runtime dependencies

devel/libxtend biology/biolibc

Binary packages

NetBSD 8.0earmv7hfad2vcf-
NetBSD 8.0earmv7hfad2vcf-0.1.2.tgz
NetBSD 8.0earmv7hfad2vcf-0.1.3.tgz
NetBSD 8.0i386ad2vcf-0.1.2.tgz
NetBSD 8.0i386ad2vcf-0.1.3.tgz
NetBSD 8.0powerpcad2vcf-0.1.2.tgz
NetBSD 8.0powerpcad2vcf-0.1.3.tgz
NetBSD 8.0powerpcad2vcf-0.1.3.tgz
NetBSD 8.0powerpcad2vcf-
NetBSD 8.0x86_64ad2vcf-0.1.2.tgz
NetBSD 8.0x86_64ad2vcf-0.1.3.tgz
NetBSD 9.0aarch64ad2vcf-
NetBSD 9.0aarch64ad2vcf-0.1.2.tgz
NetBSD 9.0aarch64ad2vcf-0.1.3.tgz
NetBSD 9.0alphaad2vcf-
NetBSD 9.0alphaad2vcf-0.1.2.tgz
NetBSD 9.0alphaad2vcf-0.1.3.tgz
NetBSD 9.0earmv6hfad2vcf-
NetBSD 9.0earmv6hfad2vcf-0.1.2.tgz
NetBSD 9.0earmv6hfad2vcf-0.1.3.tgz
NetBSD 9.0earmv7hfad2vcf-
NetBSD 9.0earmv7hfad2vcf-0.1.2.tgz
NetBSD 9.0earmv7hfad2vcf-0.1.3.tgz
NetBSD 9.0earmv7hfad2vcf-
NetBSD 9.0i386ad2vcf-0.1.2.tgz
NetBSD 9.0i386ad2vcf-0.1.3.tgz
NetBSD 9.0i386ad2vcf-
NetBSD 9.0mips64ebad2vcf-0.1.3.tgz
NetBSD 9.0mips64ebad2vcf-0.1.2.tgz
NetBSD 9.0mips64ebad2vcf-
NetBSD 9.0powerpcad2vcf-0.1.3.tgz
NetBSD 9.0powerpcad2vcf-0.1.2.tgz
NetBSD 9.0powerpcad2vcf-0.1.3.tgz
NetBSD 9.0powerpcad2vcf-
NetBSD 9.0sparc64ad2vcf-0.1.3.tgz
NetBSD 9.0sparc64ad2vcf-0.1.2.tgz
NetBSD 9.0sparc64ad2vcf-
NetBSD 9.0sparcad2vcf-0.1.3.tgz
NetBSD 9.0sparcad2vcf-0.1.2.tgz
NetBSD 9.0vaxad2vcf-0.1.2.tgz
NetBSD 9.0x86_64ad2vcf-0.1.3.tgz
NetBSD 9.0x86_64ad2vcf-
NetBSD 9.0x86_64ad2vcf-0.1.2.tgz
NetBSD 9.0x86_64ad2vcf-0.1.3.tgz
NetBSD 9.0x86_64ad2vcf-

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options


Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.